i just came across this thread. i just upgraded my CoreXY printer into an IDEX dual markforged kinematics printer, and i now experience this same jitter behavior.
after reading this thread, this behavior must be inherent to this type of kinematics. with CoreXY, the single head is equally tensioned from both sides with 4 belt connections. with dual heads, only 2 belt connections are present on each head. additionally, when the Y gantry moves, the stationary head still has its motor turn in the opposite direction to counter the drag movement.
for whatever reason, the stationary head is slightly out of sync. or possibly because the belts have the long/short end as mentioned earlier, there is slight jitter movement of the stationary head.
i tightened my belts and this greatly reduced the behavior. but its still present on violent acceleration moves. its noticeable because the stationary head is parked on the end stop, and the endstop clicks everytime the head jitters.