To get more-or-less average readings:
Two PT1000s in series or in parallel will give an average to within a few degrees
Two thermistors in parallel will give you a value that is weighted towards the higher temperature of the two
Two thermistors in series will give you an average that is weighted towards the lower of the two
For thermistors you would need to change the thermistor R25 value and make a small change to the C coefficient; or you could just pretend that the series resistor is double or half its real value. For PT1000 sensors you would need to pretend that the series resistor is double or half its real value. Alternatively, if you have another spare thermistor input, connect two thermistor inputs in parallel, then that will work with parallel-connected thermistors or PT1000 sensors.