Solved!
It turns out the config gen tool creates a homeall.g file with a series of G1 commands instead of a simple G30. When I converted it to use G30, I also left a "G92 Z0" command behind thinking it was correct. It is not when the G30 is used to home the axis. It caused a Z offset that resulted in following G29 and G32 commands to fail on probing.
I am not sure if this is a similar issue or not. Unfortunately I can no longer edit the references to it in my post.
My updated homeall.g now looks like this.
[0_1609398857654_homeall.g](Uploading 100%)
FYI, my M115...
FIRMWARE_NAME: RepRapFirmware for Duet 2 WiFi/Ethernet FIRMWARE_VERSION: 3.1.1 ELECTRONICS: Duet WiFi 1.0 or 1.01 + DueX5 FIRMWARE_DATE: 2020-05-19b2
ABear