Your axis configuration is different between what you had in RRF2 and now in RRF3. Most notably a large change in your steps per mm for the extruder, which could explain the over extrusion. The changes to extruder acceleration and jerk etc could also play part.
RRF3
M92 X100.00 Y100.00 Z400.00 E437.00 ; set steps per mm
M566 X600.00 Y600.00 Z60.00 E300.00 ; set maximum instantaneous speed changes (mm/min)
M203 X9000.00 Y9000.00 Z600.00 E6000.00 ; set maximum speeds (mm/min)
M201 X1500.00 Y1500.00 Z120.00 E3000.00 ; set accelerations (mm/s^2)
M906 X900 Y900 Z950 E900 I30 ; set motor currents (mA) and motor idle factor in per cent
RRF2
M92 X100.00 Y100.00 Z400.00 E404.00 ; Set steps per mm
M566 X600.00 Y600.00 Z12.00 E120.00 ; Set maximum instantaneous speed changes (mm/min)
M203 X6000.00 Y6000.00 Z180.00 E1200.00 ; Set maximum speeds (mm/min)
M201 X2500.00 Y2500.00 Z20.00 E1000.00 ; Set accelerations (mm/s^2)
M906 X850.00 Y850.00 Z900.00 E900.00 I30 ; Set motor currents (mA) and motor idle factor in per cent