Thank you @dc42, @Veti, and @Phaedrux. Once I get my new motor in I'll try a print before swapping the Z motors to the new set up and then swap the motors and post back for anyone that stumbles on this thread who might have the same issue.
Best posts made by Ringo1508
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RE: Horizontal lines
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Slicer settings and standard practices
I doubt it makes any difference, but should I be worried about any M204 commands that Slic3r is putting into the gcode? There's no M201, M202, or M203 commands in it.
I've set an M204 in my config.g, so I think I might try to disable M204 from being put into the gcode.
What's the general consensus/practice about this?