I'll have to toy around with it more later. I actually found out today I had a faulty PSU causing most of my headaches. On any load change it was causing my lighting to flicker a little. It was not enough to cause printing issues but it was noticable in the lighting and the main reason I was trying to get hardware PWM working (so I could do higher PWM frequencies and avoid the communication from klipper). But now that I got hardware PWM on the lights and the issue persisted, I realized it could be a bad PSU. I finally tried a different PSU and everything is perfect. Working on RMA now.
Either way, I appreciate all the info and quick responses as always.