My problem was two fold. One is my io6.out pin doesn't work according to my scope and switching to a different pin fixed things. The other is I'm using 3.2.2 when the R argument for M563 is only available in RRF >= 3.3beta2. Same Problem with using the R argument is M950, only available in RRF >=3.3beta2.
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RE: Help configuring rc servo for spindle