After rewiring(new wires for stepper and endstop) and new endstop, issue is gone...
Thank you @Phaedrux for your help and patience with me.

@Sindarius Hi, can you also look at your DWC_GamepadJogger_Plugin?
Im trying to install the gamepad plugin, but im getting "Prerequisites Invalid plugin manifest " error. Installed Touchjog pluggin with any problem.

Yes I did(at least i hope i did) as it always returned there is already new version installed, lsm=apparmor is somewhere in a middle in that /boot/cmdline.txt . Does it need to be at end?
I installed TouchJog pluggin, and that seem to work ok.

Hello, im trying to install the gamepad plugin, but im getting "Prerequisites
Invalid plugin manifest " error. Can someone help me ? Thank you
Im on

Duet Web Control 3.3.0-rc1
Board: Duet 3 MB6HC (MB6HC)
DSF Version: 3.3-rc2
Firmware: RepRapFirmware for Duet 3 MB6HC 3.3RC2 (2021-05-11) 

After rewiring(new wires for stepper and endstop) and new endstop, issue is gone...
Thank you @Phaedrux for your help and patience with me.

@Phaedrux

So they are aligning properly on the first pass until both endstops are triggered, but not on the second pass?

Can you make a video showing what's happening?

Yes, exactly.
No video yet, as im rewiring endstop and stepper. Tried replaced endstop, no joy.
New wiring will be with yet another endstop, we will see.

Do i need to split steppers if adding offset to one of steppers will be needed?
If so can you write me example code how to do that?

@Phaedrux
M98 P"config.g"
HTTP is enabled on port 80
FTP is disabled
TELNET is disabled
Warning: Macro file config-override.g not found

m122
=== Diagnostics ===
RepRapFirmware for Duet 2 WiFi/Ethernet version 3.2.2 running on Duet WiFi 1.02 or later
Board ID: 08DGM-9T6BU-FG3S4-6J1FL-3SN6S-9SNRH
Used output buffers: 4 of 24 (20 max)
=== RTOS ===
Static ram: 23460
Dynamic ram: 72128 of which 52 recycled
Never used RAM 16440, free system stack 119 words
Tasks: NETWORK(ready,187) HEAT(blocked,366) MAIN(running,543) IDLE(ready,20)
Owned mutexes: WiFi(NETWORK)
=== Platform ===
Last reset 00:00:50 ago, cause: software
Last software reset at 2021-02-25 21:13, reason: User, GCodes spinning, available RAM 16408, slot 2
Software reset code 0x0003 HFSR 0x00000000 CFSR 0x00000000 ICSR 0x0041f000 BFAR 0xe000ed38 SP 0x00000000 Task MAIN Freestk 0 n/a
Error status: 0x00
Aux0 errors 0,0,0
MCU temperature: min 38.0, current 38.4, max 38.6
Supply voltage: min 24.0, current 24.1, max 24.2, under voltage events: 0, over voltage events: 0, power good: yes
Driver 0: position 0, standstill, SG min/max 0/109
Driver 1: position 0, standstill, SG min/max not available
Driver 2: position 0, standstill, SG min/max not available
Driver 3: position 0, standstill, SG min/max 0/69
Driver 4: position 0, standstill, SG min/max not available
Driver 5: position 0
Driver 6: position 0
Driver 7: position 0
Driver 8: position 0
Driver 9: position 0
Driver 10: position 0
Driver 11: position 0
Date/time: 2021-02-25 21:14:03
Cache data hit count 60171643
Slowest loop: 8.73ms; fastest: 0.21ms
I2C nak errors 0, send timeouts 0, receive timeouts 0, finishTimeouts 0, resets 0
=== Storage ===
Free file entries: 10
SD card 0 detected, interface speed: 20.0MBytes/sec
SD card longest read time 3.2ms, write time 1.5ms, max retries 0
=== Move ===
DMs created 83, maxWait 34339ms, bed compensation in use: none, comp offset 0.000
=== MainDDARing ===
Scheduled moves 10, completed moves 10, hiccups 0, stepErrors 0, LaErrors 0, Underruns [0, 0, 0], CDDA state -1
=== AuxDDARing ===
Scheduled moves 0, completed moves 0, hiccups 0, stepErrors 0, LaErrors 0, Underruns [0, 0, 0], CDDA state -1
=== Heat ===
Bed heaters = -1 -1 -1 -1, chamberHeaters = -1 -1 -1 -1
=== GCodes ===
Segments left: 0
Movement lock held by null
HTTP is idle in state(s) 0
Telnet is idle in state(s) 0
File is idle in state(s) 0
USB is idle in state(s) 0
Aux is idle in state(s) 0
Trigger is idle in state(s) 0
Queue is idle in state(s) 0
LCD is idle in state(s) 0
Daemon is idle in state(s) 0
Autopause is idle in state(s) 0
Code queue is empty.
=== Network ===
Slowest loop: 201.46ms; fastest: 0.11ms
Responder states: HTTP(0) HTTP(0) HTTP(0) HTTP(0) FTP(0) Telnet(0), 0 sessions
HTTP sessions: 2 of 8
- WiFi -
Network state is active
WiFi module is connected to access point 
Failed messages: pending 0, notready 0, noresp 1
WiFi firmware version 1.25
WiFi MAC address cc:50:e3:4a:ad:68
WiFi Vcc 3.31, reset reason Turned on by main processor
WiFi flash size 4194304, free heap 25680
WiFi IP address 192.168.1.81
WiFi signal strength -73dBm, mode 802.11n, reconnections 0, sleep mode modem
Clock register 00002002
Socket states: 0 0 0 0 0 0 0 0

M122 sent after homig X and Y

@Phaedrux they do, if tested manualy and in first homing pas. After second pas, that slow approach, only one is triggered, Ystop, and Zstop is not. Stepper do not come close to trigger it, its like 0.5mm away.

@Phaedrux said in how do i do dual endstops for X and Y axis on my cnc:

You can leave the P3 off entirely. It's mainly used for when you have multiple temporary axis like UVW. You're not doing anything like that since with RRF3 you don't need to split up the axis for homing anymore.

What exactly happens with the Y axis when you do homey?
Does it move in the correct direction towards the endstop?
Does it stop before it hits the endstop?
If you click the endstop by hand while it's moving does it stop the axis?

P3 removed.
when i try to home Y. Steppers are moving, direction is ok. They both hit endstops, if misaligned stepper that did not hit the unstop is mooving until he does hit endstop. Then they move back together, and together in correct direction moving lowly towards endstops. However only one endstop is triggered and then steppers stops, homig ends as homed.

@Phaedrux said in how do i do dual endstops for X and Y axis on my cnc:
Ok, removed H2 and increased the distance in both home.g files. Thanks.
But nothing changed, X homing OK, Y does not.

Why do you have P3?

Isn't that P3 to show those 3 axes? To home them and move them?

Hi
Can someone help mi with problem i have?
there is something wrong with my homing Y.
I do homig, steppers are moving, they both hit endstops, move back a bit, but then, only one on my steppers is going to hit endstop (Zstepper is triggers zstop).
Ystepper is not hitting the endstop. LED on mb is not lid.
Board: Duet 2 WiFi (2WiFi)
Firmware: RepRapFirmware for Duet 2 WiFi/Ethernet 3.2.2 (2021-02-11)
Duet WiFi Server Version: 1.25

; Configuration file for Duet WiFi (firmware version 3)
; executed by the firmware on start-up
;
; generated by RepRapFirmware Configuration Tool v3.2.3 on Sat Feb 20 2021 18:30:24 GMT+0100 (Central European Standard Time)

; General preferences
G90                                     ; send absolute coordinates...
M83                                     ; ...but relative extruder moves
M550 P"Primo"                       ; set printer name

; Network
M552 S1                                 ; enable network
M586 P0 S1                              ; enable HTTP
M586 P1 S0                              ; disable FTP
M586 P2 S0                              ; disable Telnet

; Drives
M569 P0 S0                              ; physical drive 0  X
M569 P1 S1                              ; physical drive 1  Y
M569 P2 S0                              ; physical drive 2  Z
M569 P3 S0								; physical drive 3  E0
M569 P4 S1								; physical drive 4  E1
M569 P5 S1								; physical drive 5 goes forwards
M584 X0:3 Y1:2 Z4 P3						; set drive mapping
M350 X16 Y16 Z16 I1                 ; configure microstepping with interpolation
M92 X80.00 Y80.00 Z400.00				; set steps per mm
M566 X900.00 Y900.00 Z60.00				; set maximum instantaneous speed changes (mm/min)
M203 X6000.00 Y6000.00 Z280.00			; set maximum speeds (mm/min)
M201 X500.00 Y500.00 Z20.00				; set accelerations (mm/s^2)
M906 X900 Y900 Z900 I30            ; set motor currents (mA) and motor idle factor in per cent
M84 S60                                 ; Set idle timeout

; Axis Limits
M208 X0 Y0 Z0 S1                        ; set axis minima
M208 X480 Y350 Z200 S0                  ; set axis maxima

; Endstops
M574 X1 S1 P"xstop+e0stop"              ; configure active-high endstop for low end on X via pin xstop
M574 Y1 S1 P"ystop+zstop"

; Z-Probe
M558 P0 H5 F120 T6000                   ; disable Z probe but set dive height, probe speed and travel speed
M557 X15:215 Y15:195 S20                ; define mesh grid

; Heaters
M140 H-1                                ; disable heated bed (overrides default heater mapping)

; Fans

; Tools

; Custom settings are not defined

; Miscellaneous
M575 P1 S1 B57600                       ; enable support for PanelDue
M501                                    ; load saved parameters from non-volatile memory

homex.g

; homex.g
; called to home the X axis
;
; generated by RepRapFirmware Configuration Tool v3.2.3 on Sat Feb 20 2021 18:30:24 GMT+0100 (Central European Standard Time)
G91               ; relative positioning
G1 H2 Z5 F6000    ; lift Z relative to current position
G1 H1 X-235 F1800 ; move quickly to X axis endstop and stop there (first pass)
G1 H2 X5 F6000    ; go back a few mm
G1 H1 X-235 F360  ; move slowly to X axis endstop once more (second pass)
G1 H2 Z-5 F6000   ; lower Z again
G90               ; absolute positioning

homey.g

; homey.g
; called to home the Y axis
;
; generated by RepRapFirmware Configuration Tool v3.2.3 on Sat Feb 20 2021 18:30:24 GMT+0100 (Central European Standard Time)

G91               ; relative positioning
G1 H2 Z5 F6000    ; lift Z relative to current position
G1 H1 Y-235 F1800 ; move quickly to Y axis endstop and stop there (first pass)
G1 H2 Y5 F6000    ; go back a few mm
G1 H1 Y-235 F360  ; move slowly to Y axis endstop once more (second pass)
G1 H2 Z-5 F6000   ; lower Z again
G90               ; absolute positioning

thank you for any help