SOLVED
I took the belt off of the Y motors to check to see what happens under no load. The 4 set screws for the Y motor gears were all loose. The error was caused by play in the belt gear (timing pully). After adding some locktite and assembling everything back together, I am printing circles again and any other shape without issues.
Thank you for everyone who took the time to help me solve this one!
@pakue There was some play on the Z axis that I resolved by tightening up the tension of the rollers. I however don't believe this to be the problem as when the printer is not under any tension the motors will still move with the stutter. I'll try removing the belt and see if they still stutter under zero load.
@JoergS5 This could be possible. However I don't know exactly how to rectify that. Today I release all the cables from the cable chains and held them loosely separated during a print to now effect. As far as cables being too short I am currently using 7 foot cables on everything. Both Y motors have some extra wire that is bundled near the board normally.
I also woke up this morning thinking the cable chain was bumping but confirmed that to not be the case.
Thank you for all your suggestions and input!