Jay_s_uk hit it right on the head, I was missing the M671.
Here is the config with the 671 configured, It's a long one but it works.
; generated by RepRapFirmware Configuration Tool v3.3.0 on Tue Aug 10 2021 15:48:47 GMT-0400 (Eastern Daylight Time)
; General preferences
M575 P1 S1 B57600 ; enable support for PanelDue
G90 ; send absolute coordinates...
M83 ; ...but relative extruder moves
; Network
M552 S1 ; enable network
M586 P0 S1 ; enable HTTP
M586 P1 S0 ; disable FTP
M586 P2 S0 ; disable Telnet
; Drives
M569 P0 S1 ; physical drive 0 goes forward (Y)
M569 P1 S0 ; physical drive 1 goes backward (Y)
M569 P2 S0 ; physical drive 2 goes backward (X)
M569 P3 S1 ; physical drive 3 goes forward (E0)
M569 P4 S1 ; Physical Drive 4 goes forward (E1)
; Z axis motors are plugged into the Duex contoller numbers 5-8
M569 P5 S1 ; Physical Drive 5 goes forward (Z-LR)
M569 P6 S1 ; Physical Drive 6 goes forward (Z-LF)
M569 P7 S1 ; Physical Drive 7 goes forward (Z-LF)
M569 P8 S1 ; Physical Drive 8 goes forward (Z-LF)
M584 X2 Y0:1 Z5:6:7:8 E3:4 ; set drive mapping
;Z axis leadscrew locations
M671 X-70.0:-70.0:570.0:570.0 Y40.0:520.0:520.0:40.0 S5 ; Z leadscrews are at (-70,40)LR #5, (-70,520)LF #6, (570,520)RF #7 and (570,40)RR #8 , 5mm max correction
M350 X16 Y16 Z16 E16:16 I1 ; configure microstepping with interpolation
M92 X160.00 Y80.00 Z400.00 E695.00:695.00 ; set steps per mm
M566 X900.00 Y900.00 Z60.00 E120.00:120.00 ; set maximum instantaneous speed changes (mm/min)
M203 X6000.00 Y6000.00 Z500.00 E1200.00:1200.00 ; set maximum speeds (mm/min)
M201 X500.00 Y500.00 Z20.00 E250.00:250.00 ; set accelerations (mm/s^2)
M906 X800 Y800 Z800 E450:450 I30 ; set motor currents (mA) and motor idle factor in per cent
M84 S180 ; Set idle timeout
; Axis Limits
M208 X0 Y0 Z0 S1 ; set axis minima
M208 X500 Y500 Z500 S0 ; set axis maxima
; Endstops
M574 X1 S1 P"xstop" ; configure active-high endstop for low end on X via pin xstop
M574 Y1 S1 P"ystop+zstop" ; configure active-high duel endstops for low end on Y via pins (ystop(L))(zstop(R)
;M574 Y2 S1 P"zstop" ; configure active-high endstop for low end on Y(R) via pin zstop
M574 Z1 S1 ; configure Z-probe endstop for low end on Z
; Z-Probe
M950 S0 C"duex.pwm5" ; create servo pin 0 for BLTouch
M558 P9 C"^zprobe.in" H5 F120 T6000 ; set Z probe type to bltouch and the dive height + speeds
;M558 H30 ;*** Remove this line after delta calibration has been done and new delta parameters have been saved
G31 P500 X5 Y0 Z2.3 ; set Z probe trigger value, offset and trigger height
M557 X15:485 Y15:485 S47 ; define mesh grid