@chrishamm It appears to be happening much less with 3.5.1, though I was able to trigger a SPI reset; it happened after about 40 moves instead of one or two.
Instead it appears the data capture is being cut off somewhere, as the received data should be 1 second long but i am only getting around 150-350ms of data back for each run. Once in awhile (about every 10 runs) I get a complete data log.
Here's a screenshot showing my settings and the returned data:
EDIT: Looks like I spoke too soon, it seems to be resetting just as often on longer moves (100mm+).
I also validated that the endstop wasn't the culprit by unplugging it after homing, it still seems to reset without that connected.